PropertyValue
dcterms:contributor
is ompw:correspondsToTemplate of
ompw:createdInWorkflowSystem
  • http://wings.isi.edu (xsd:anyURI)
prov:hadPrimarySource
  • http://wind.isi.edu/marbles/assets/components/workflow_portal/users/2/genomics/ontology/genomics/ParenTDT_Workflow.owl (xsd:anyURI)
ompw:hasDocumentation
  • This is variant of the basic family-based association testing for disease traits that also incorporates parental phenotype information, the ParenTDT function in PLINK.

    Input: [PEDFile], [MAPFile]
    Output: [OutputTDT], [OutputTDTPerm]

    • CreateBinaryPEDFile: This component converts hapmap format into efficient binary format used by Plink.
      • plink --file [InputPEDFile] --make-bed --out [OutputBPEDFile]

    • ParenTDT: This is the same as a basic TDT test except the permutation output is based not on the standard TDT, but the parenTDT.
      • plink --bed [BPEDFile] --bim [BIMFile] --fam [FAMFile] --parentdt1 --out [OutputTDT]

ompw:hasNativeSystemTemplate
  • http://wind.isi.edu/marbles/assets/components/workflow_portal/users/2/genomics/ontology/genomics/ParenTDT_Workflow.owl (xsd:anyURI)
ompw:hasTemplateDiagram
  • http://wind.isi.edu/marbles/assets/components/workflow_portal/users/2/genomics/ontology/genomics/ParenTDT_Workflow.owl.png (xsd:anyURI)
is ompw:isStepOfTemplate of
is ompw:isVariableOfTemplate of
rdfs:label
  • ParenTDT_Workflow
dc:rights
  • http://creativecommons.org/licenses/by-sa/3.0/ (xsd:anyURI)
rdf:type
ompw:versionNumber
  • 2 (xsd:int)